Hi Sandeep.
I assume you are getting error FZ003 (Company codes &/& do not appear in proposal & &; correct) when filtering by document number.
If this is the case and the only difference between proposals is the document number (with and without filtering document number), please check when filtering, to populate the document number with the full 10 digits, with zeros at left (Eg. 0012345678). If 10 digits were populated and exclude flag was not active, then your case seems weird.
Best regards!